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Overview
Syllabus
Reading
Labs
Computing Resources
Project
FALL 2016
Lectures
Mon 9:30-11:00
Wed 9:30-11:00
Labs
Fri 1:00-4:00
Room
BH-215
Professor
Katie Pollard
TA
Svetlana Lyalina
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Syllabus
| Day | Date | Instructor(s) | Topic | Materials |
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| F | 23-Sept | Pollard | Basic statistical concepts
Course overview | Overview, Slides |
| M | 26-Sept | Pollard | Continuous data,
linear models, model selection | Slides, Code |
| W | 28-Sept | Pollard | Categorical data,
contingency tables | Slides, Study Designs, Sampling Distributions, Code |
| F | 30-Sept | Pollard, Ahituv | UCSC Genome Browser | See Labs |
| M | 3-Oct | Pollard | Metagenomics | Slides, See Papers |
| W | 5-Oct | Pollard | Generalized linear models | Slides, Exponential Family, Code |
| F | 7-Oct | Ladau, Pollard | Microbial niche
modeling lab | See Labs |
| M | 10-Oct | Pollard | Gene expression | Slides, See Papers |
| W | 12-Oct | Pollard | Multiple hypothesis
testing | Slides, Code |
| F | 14-Oct | Williams, Pollard | RNA-seq lab | See Labs |
| M | 17-Oct | Pollard, Thomas | Epigenomics | Slides, See Papers |
| W | 19-Oct | Pollard | Clustering and classification | Slides |
| F | 21-Oct | Whalen | Machine learning lab | See Labs |
| M | 24-Oct | Zaitlen | Population
genetics | Slides+Code, See Papers |
| W | 26-Oct | Zaitlen | QTL analysis, mixed models, multivariate statistics | Slides+Code |
| F | 28-Oct | Zaitlen | Genetics lab | See Labs |
| M | 31-Oct | Baranzini | Networks and graphs | Slides, See Papers |
| W | 2-Nov | Baranzini | Biological networks | Slides |
| F | 4-Nov | Baranzini | Cytoscape lab | See Labs |
| M | 7-Nov | - | PRESENTATIONS | - |
| W | 9-Nov | - | PRESENTATIONS | - |
| F | 11-Nov | - | Holiday - no class | - |
| M | 14-Nov | Sali | Protein
structures | Slides |
| W | 16-Nov | Hernandez | Bayesian
statistics | Slides |
| Fri | 18-Nov | Webb | Structure prediction
lab | See Labs |
| M | 21-Nov | Segal | Chromatin structure | Slides |
| W | 23-Nov | Pollard | Stochastic models | Slides |
| F | 25-Nov | - | Holiday - no class | - |
| M | 28-Nov | Pollard | PRESENTATIONS | - |
| W | 30-Nov | Pollard | PRESENTATIONS | - |
| F | 2-Dec | Pollard | PRESENTATIONS | - |
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