BMI206: Statistical Methods
OVERVIEW – SYLLABUS – READING – LABS – TUTORIALS – PROJECT
Statistical Analysis Labs
Labs will be introduced on Tuesdays. In-class work is on Thursdays, and the remainder of the lab is homework due Friday.
Work on labs asynchronously, collaboration encouraged.
Turn in your write up of each lab by midnight Friday by email to Prof. Pollard and the TAs.
| Due Date | Topic | Files | To Prepare |
|---|---|---|---|
| Oct 19 | Linear models for quantitative genetics | files solution |
Download and review files Install the most current version of R on your laptop and get familiar with it Install Jupyter including installing R essentials (details in tutorial) |
| Oct 26 | Genomic enrichment analysis | files solution |
Download and review files Read and run through the regioneR vignette |
| Nov 9 | Exploratory data analysis | files solution |
Slides-Exploratory Data Analysis Ch7: EDA from R for Data Science EDA: data visualization or torture? Download and review files |
| Nov 30 | Networks and Cytoscape | files solution |
Download and review files Install the most current version of Cytoscape on your laptop and get familiar with it Install the Cytoscape app BiNGO Install the R packages plyr, RColorBrewer, and ggplot2 |
| Dec 7 | Visualizing single-cell data | files solution |
Download and review files Install the R packages Rtsne and Matrix |