BMI206: Statistical Methods

OVERVIEWSYLLABUSREADING –  LABS – RESOURCESFINAL

Labs

Labs will be introduced on Tuesdays, small group discussions on Thursdays.

Work on labs asynchronously, collaboration encouraged.

Homework portion of each lab is due midnight Friday by email to Prof. Pollard and the TAs.

Date Topic Files To Prepare
Oct 20-22 Linear models for quantitative genetics files
solution
Download and review files
Install the most current version of R on your laptop and get familiar with it
Install Jupyter including installing R essentials (details in tutorial)
Nov 3-5 Genomic enrichment analysis files
solution
Download and review files
Read and run through the regioneR vignette
Nov 10-12 Statistics tutorial (optional, no homework) files Download and review files
Nov 17-19 Networks and Cytoscape files
solution
Download and review files
Install the most current version of Cytoscape on your laptop and get familiar with it
Install the Cytoscape app BiNGO
Install the R packages plyr, RColorBrewer, and ggplot2
Dec 1-3 Visualizing single-cell data files
solution
Download and review files
Install the R packages Rtsne and Matrix